On the Home tab, in the Drawing group, click Arrange, and do the following:Point to Align, and then click Align Selected Objects.Point to Align, and then click Align Center.Click Group. Also in the Format Shape dialog box, click Shadow in the left pane. ISACGH -- InSilicoArray CGH A web-based environment for the analysis … How It Works. In the Spin dialog box, do the following:On the Effects tab, in the Amount list, in the Custom box, enter 123°,and then press ENTER. Is there a way to improve them or design a better one? 1. Hypothesis-driven statistical analysis: Identification of statistically significant changes in gene expression are commonly identified using the t-test, ANOVA, Bayesian method Mann–Whitney test methods … Learn how to capture the broad effects of gene expression changes using whole-transcriptome analysis with total RNA sequencing (total RNA-Seq). Genetic variants affect gene expression. Under Drawing Tools, on the Format tab, in the bottom right corner of the Size group, click the Size and Position dialog box launcher. Experimental question. Under Drawing Tools, on the Format tab, in the bottom right corner of the Size group, click the Size and Position dialog box launcher. Slideshare uses cookies to improve functionality and performance, and to provide you with relevant advertising. On the Animations tab, in the Advanced Animation group, click Add Animation,and then under Entrance click Fade. On the slide, select the third oval. On the Timing tab, in the Duration box, , enter 0.50.On the Timing tab, in the Startlist, select After Previous. ‘The Analysis of Gene Expression Data: Methods and Software’ appears as a successful attempt. Gene expression analysis. - Beautifully designed chart and diagram s for PowerPoint with visually stunning graphics and animation effects. When genes are … In the Format Background dialog box, click Fill in the left pane, select Solid fill in the right pane, and select White, Background 1 … Looks like you’ve clipped this slide to already. Animated pointer and light-up text (Advanced)To reproduce the background effects on this slide, do the following:On the Home tab, in theSlides group, click Layout, and then click Blank.Right-click the slide background area, and then click Format Background. On the Timing tab, in the Duration box, enter 0.50.On the slide, select the second oval. Map SNP's to genes, and genes to groups. In the Selection and Visibility task pane, select the rectangle group. In the Colors dialog box, on the Custom tab, enter values for Red:130, Green:153, Blue: 117. Click the button next to Color, and then under Theme Colors click Olive Green, Accent 3, Lighter 80°(second row, seventh option from the left).Also in the Format Shape dialog box, click Line Color in the left pane. Pathways' The Genome Access Course. • Both if the expression levels between sister partitions are very similar, or if the expression … Drag the yellow diamond adjustment handle to the left to decrease the amount of rounding on the corners. As each gene pair has a single co-expression value within a given condition (i.e. Serial analysis of gene expression (SAGE). Use a suite of algorithms and tools for the analysis of gene expression data and the discovery of cis-regulatory sequence elements. On the Animations tab, in the Advanced Animation group, click Add Animation, and then under Emphasis click Spin. With the rounded rectangle still selected, under Drawing Tools, on the Format tab, in the Size group, do the following:In the Shape Height box, enter 3.5”.In the Shape Width box, enter 0.25”.Under Drawing Tools, on the Format tab, in the bottom right corner of the Shape Styles group, click the Format Shape dialog box launcher. Gene expression … Expression of gene IKZF1. Mohammed Talha
Khatkhatay
1
SAGE
(Serial Analysis of Gene Expression)
SAGE
(Serial Analysis of Gene Expression)
. In the Fill Color dialog box, do the following:On the Effects tab, in the Fill Color list, click More Colors. - cytoband-based gene set enrichment analysis detected sparcl1 as a molecular marker of colorectal cancer liver metastasis ... Gene Set Enrichment and Pathways Analysis. In the Fill pane, select Solid Fill. - Low fat/high carbohydrate diet and High fat/low carbohydrate diet ... allows detection at dye concentration as low as 0.2 pmol/ul. Download. In Fill Color dialog box, the do the following:On the Effects tab, in the Fill Color list, click More Colors. On the Animations tab, in the Advanced Animation group, click Add Animation, and then click More Emphasis Effects. On the Animations tab, in the Advanced Animation group, click Add Animation, and then under Entrance click Fade.Also on the Animations tab, in the Timing group, do the following:In theStart list, selectWith Previous.In the Duration box, enter 0.50. Click Align Middle. No public clipboards found for this slide, SAGE (Serial analysis of Gene Expression). )Press and hold CTRL, and then select both rectangles. - Of Epidemiology and Biostatistics, 2010 ... (GSEA) Gene Set Enrichment Analysis (GSEA) Parametric ... Z = Sm-m s/m0.5 The test statistic used for the gene ... | PowerPoint PPT presentation | free to view, CYTOBAND-BASED GENE SET ENRICHMENT ANALYSIS DETECTED SPARCL1 AS A MOLECULAR MARKER OF COLORECTAL CANCER LIVER METASTASIS. the determination of the pattern of genes expressed at the level of genetic transcription, under specific circumstances or in a specific cell. TFs, receptors, etc. Gene Expression: Concept and Analysis Noha Lotfy Ibrahim The Central Dogma • Proposed by Francis Crick 1958 • DNA holds the coded hereditary information in the nucleus • This code is expressed at the … Serial Analysis of Gene Expression (SAGE) requires the isolation of mRNA and the generation of cDNA from which unique small sequences (∼14 bp), or tags, are … You can change your ad preferences anytime. On the Home tab, in the Drawing group, do the following:Click the arrow next to Shape Fill, and then click No Fill.Click the arrow next to Shape Outline, and then click No Outline.Drag the second rectangle above the first rectangle until the lower edge overlays the top edge of the first rectangle. Gene Expression Presentation Transcript: 1. Integrating genome-wide eQTL data to identify gene association networks ... Chr 15 qRT-PCR ... Gene%20expression%20studies%20of%20cancer:%20gene%20transcription%20signatures, - Gene expression studies of cancer: gene transcription signatures. CONFIDENTIAL ... - Canadian Bioinformatics Workshops www.bioinformatics.ca. Enrichment analysis ... EFFECT OF CALORIE RESTRICTION ON GENE EXPRESSION PROFILE IN HUMAN ADIPOSE TISSUE. Our new CrystalGraphics Chart and Diagram Slides for PowerPoint is a collection of over 1000 impressively designed data-driven chart and editable diagram s guaranteed to impress any audience. On the slide, drag to draw a rounded rectangle.Select the rectangle. Also in the Amount list, clickCounterclockwise.On the Timing tab, in the Duration box, select 1.00. High specificity, +/- high through-put. - Custom list of targets, IDs 'Most important' genes - Highly connected. presentations for free. In the Shadow pane, click the button next to Presets, under Outer click Offset Bottom (first row, second option from the left), and then do the following:In the Transparency box, enter 0%.In the Size box, enter 100%.In the Blur box, enter 8.5 pt.In the Angle box, enter 90°.In the Distance box, enter 1 pt.Also in the Format Shape dialog box, click 3-D Format in the left pane, and then do the following in the 3-D Format pane:Under Bevel, click the button next to Top, and then under Bevel click Art Deco (third row, fourth option from the left). Summer Inst. (2018) Differential Gene Expression Analysis of Plants. In the Colors dialog box, on the Custom tab, enter values for Red:130, Green:153, Blue: 117. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Enter text in the text box and select the text. On the Animations tab, in the Advanced Animation group, click Add Animation, and then click More Emphasis Effects.In the Add Emphasis Effect dialog box, under Basic, click Fill Color. Also in the Format Shape dialog box, click Shadow in the left pane. Also on the Animations tab, in the Timing group, do the following:In theStart list, selectWith Previous.In the Duration box, enter 0.50.On the slide, select the fourth oval. We use your LinkedIn profile and activity data to personalize ads and to show you more relevant ads. BMI 705 Kun Huang Department of Biomedical Informatics Ohio State University, - Title: PowerPoint Presentation - Welcome to SMD Author: John Matese Last modified by: Janos Demeter Created Date: 4/16/2002 5:44:25 PM Document presentation format, - Title: Welcome to the Broad Institute Author: Administrator Last modified by: Administrator Created Date: 8/6/2010 3:30:52 PM Document presentation format. are available. Science's Biochemical. Whole-Transcriptome Analysis. In the 3-D Format tab, do the following:Under Bevel, click the button next to Top, and then under Bevel click Circle (first row, first option from the left). - A Discussion of False Discovery Rate and the ... Myostatin Knockout Mice vs. Wild Type. Analysis … Do you have PowerPoint slides to share? On the Timing tab, in the Duration box, enter 0.50.On the slide, select the fourth text box. Expression Profiles • for most of these methods, we can think of the output as a 2D matrix • rows represent genes • columns represent different experimental conditions (e.g., people with different types of leukemia) • each row/column represents an expression … On the Home tab, in the Clipboard group, click the arrow to the right of Copy, and then click Duplicate.Select the duplicate rectangle. ... Alzheimer's disease, Huntington's disease, Prion disease.... 2. ... How and why do they work? In the Add Emphasis Effect dialog box, under Basic, click Fill Color. myostatin gene. Or use it to create really cool photo slideshows - with 2D and 3D transitions, animation, and your choice of music - that you can share with your Facebook friends or Google+ circles. The methods for differential gene expression analysis from RNA-Seq can be grouped into two main subsets: parametric and non-parametric. replicate measurements for a pair of genes determine a single co-expression value), the DE analysis is carried out using EBarrays, an empirical Bayes approach that shares information across genes (or in this case gene … Serial Analysis of Gene Expression. On the Animations tab, in the Advanced Animation group, click Add Animation, and then under Entrance click Fade.Also on the Animations tab, in the Timing group, do the following:In theStart list, selectWith Previous.In the Duration box, enter 0.50. On the slide, drag to draw an arc.Select the arc. On the Timing tab, in the Duration box, enter 0.50.On the slide, select the second text box. Methods such as SAGE or Microarray analysis(MA) are used. Protein ... - To systematically structuring and managing the knowledge? In: Raghavachari N., Garcia-Reyero N. (eds) Gene Expression Analysis. Next to Top, in the Width box, enter 5 pt, and in the Height box, enter 5 pt.Under Surface, click the button next to Material, and then under Standard clickMatte (first row, first option from the left).Click the button next to Lighting, and then under Neutral click Soft (first row, third option from the left).On the slide, select the rounded rectangle. PowerShow.com is a leading presentation/slideshow sharing website. In the Fill pane, select Solid fill, click the button next to Color, and then under Theme Colors click White, Background 1, Darker 15% (third row, first option from the left).Also in the Format Shape dialog box, click Line Color in the left pane. In the Add Emphasis Effect dialog box, under Basic, click Fill Color. On the Home tab, in the Clipboard group, click the arrow to the right of Copy, and then click Duplicate. Gene expression profiling measures which genes are being expressed in a cell at any given moment. This method detects … In the Selection and Visibility task pane, select the rectangle group. On the Timing tab, in the Startlist, select After Previous. Of Epidemiology and Biostatistics, 2010: Gene Expression Data Analysis 1:30pm. - Pathway Analysis Goals Characterize biological meaning of joint changes in gene expression Organize expression (or other) changes into meaningful chunks (themes ... Summer Inst. Parametric methods capture all information about … Drag the second text box to the right of the second oval.Repeat steps 5-7 to create the third and fourth text boxes, dragging them to the right of the third and fourth ovals. 2018 Gene Expression Analysis Market across Globe- Opportunities, Challenges & Threats - Gene Expression Analysis Market Analysis, Trends and Insights, 2018 Gene Expression Analysis Market - by Technology (DNA Microarray, Real-Time PCR, Next Generation Sequencing), Consumables (DNA Chips, Reagents), Services (Gene Profiling, Bioinformatics, Data Analysis … More detailed descriptions of both the technology and the data analysis methods … Under Drawing Tools, on the Format tab, in the Size group, do the following:In the Shape Height box, enter 0.34”.In the Shape Width box, enter 0.34”.Under Drawing Tools, on the Format tab, in the Shape Styles group, click More, and then click Light 1 Outline, Colored Fill – Olive Green, Accent 3 (third row, first option from the left).Under Drawing Tools, on the Format tab, in the bottom right corner of the Shape Styles group, click the Format Shape dialog box launcher. In the Spin dialog box, do the following:On the Effects tab, in the Amount list, in the Custom box, enter 22°, and then press ENTER. In the Format Background dialog box, click Fill in the left pane, select Solid fill in the right pane, and select White, Background 1 (first row, first option from the left).To reproduce the rectangle on this slide, do the following:On the Home tab, in the Drawing group, click Shapes, and then under Rectangles click Rounded Rectangle (second option from the left). Medical Biochemistry 2. On the Animations tab, in the Advanced Animation group, click Add Animation, and then under Entrance clickFade. Use linkage p-values in place of t-scores in GSEA ... Integrated%20transcriptional%20profiling%20and%20linkage%20analysis%20for%20mapping%20disease%20genes%20and%20regulatory%20gene%20networks%20analysis. In RNAseq experiments, mRNAs are from a bulk of cells and a gene expression value is the average of thousands of cells’ expression … In the Format Shape dialog box, click Shadow in the left pane. On the slide, select the first text box. - Microarray data analysis using GEPAS and Babelomics Department of Bioinformatics, Centro de Investigaci n Pr ncipe Felipe, and Functional genomics node, INB, Spain. Gene is basic unit of heredity and is a segment for genomic information. To reproduce the animation effects on this slide, do the following:On the Home tab, in the Editing group, click Select, and then click Selection Pane. On the Animations tab, in the Advanced Animation group, click Add Animation, and then under Emphasis click Spin.Also on the Animations tab, in the Animation group, click the Effect Options dialog box launcher. SNP genotype at chr20: 5177528. eQTL (expression Quantitative Trait Locus) analysis: Association between genotype and RNA expression … Point to Align, and then click Align Middle. In the Colors dialog box, on the Custom tab, enter values for Red:130, Green:153, Blue: 117. Common methods of transcript analysis by Northern and dot-blot hybridizations using nonradioactive probing methods are described. DNA. Microarray-based Disease Prognosis using Gene Annotation Signatures, - Title: Introduction to R Author: Jagadish Rangrej Last modified by: Daniele Merico Created Date: 2/23/2010 6:45:01 PM Document presentation format, Pathways, Networks and Systems Biology OR, - Pathways, Networks and Systems Biology OR what do I do with my gene list? It consist of both ‘coding’ and ‘non … Clipping is a handy way to collect important slides you want to go back to later. CC CA AA. Protein synthesis. Quantification of mRNA transcript abundance. They'll give your presentations a professional, memorable appearance - the kind of sophisticated look that today's audiences expect. Microarrays are one of the latest breakthroughs in experimental molecular biology, which allow monitoring of gene expression for tens of thousands of genes in parallel and are already producing huge amounts of valuable data. To reproduce the half circle on this slide, do the following:On the slide, select the arc. In the Add Emphasis Effect dialog box, under Basic, click Fill Color. Crossref | PubMed | ISI Google Scholar; 30 Lee ML, Kuo FC, Whitmore GA, and Sklar J. The method compares the expression levels of genes in a given cluster and the ones in the sister partition. Clustering Analysis Silhouette index • Silhouette index is employed to asses the quality of each partition. Proc Natl Acad Sci USA 94: 13057–13062, 1997. PPT On Gene Expression. The importance of leaf rolling in rice (Oryza sativa L.) has been widely recognized. The PowerPoint PPT presentation: "Gene Set Enrichment Analysis (GSEA)" is the property of its rightful owner. If so, share your PPT presentation slides online with PowerShow.com. In the Shadow pane, click the button next to Presets , under Inner click Inside Right (second row, third option from the left), and then do the following:In the Transparency box, enter 86%.In the Blur box, enter 24 pt.In the Angle box, enter 315°.In the Distance box, enter 4 pt.On the slide, drag the second arc until the yellow diamond adjustment handles are on the left edge of the slide. See our User Agreement and Privacy Policy. Title: Gene Set Enrichment Analysis (GSEA) 1 Gene Set Enrichment Analysis (GSEA) 2 Gene expression analysis (Microarray RNA-seq) Condition A (untreated) Condition B treated Gene expression matrix k … On the Timing tab, in the Speedlist, select Very Fast.On the slide, select the third text box. On the Timing tab, in the Startlist, select After Previous. On the slide, drag to draw an oval.Select the oval. And they’re ready for you to use in your PowerPoint presentations the moment you need them. Under Drawing Tools, on the Format tab, in the Size group, do the following:In the Shape Height box, enter 3.33”.In the Shape Width box, enter 3.33”.With the second arc still selected, under Drawing Tools, on the Format tab, in the Shape Styles group, click the arrow next to Shape Fill, and then under Theme Colors click White, Background 1, Darker 5% (second row, first option from the left).Under Drawing Tools, on the Format tab, in the Shape Styles group, click the arrow next to Shape Outline,and then click No Outline.Under Drawing Tools, on the Format tab, in the Shape Styles group, click Shape Effects, point to Shadow, and then click ShadowOptions. Animated pointer and light-up text(Advanced)To reproduce the background effects on this slide, do the following:On the Home tab, in theSlides group, click Layout, and then click Blank.Right-click the slide background area, and then click Format Background. Gabriela Salinas-Riester Linking genome-wide analysis to genomic medicine_2011 2/22 Microarray_Introduction Methods for the Study of Gene Expression From genotype to phenotype: the transcriptome Types of RNAs and their functions Methods for Study gene expression … Of Epidemiology and Biostatistics, 2008: Gene Expression Data Analysis 8:30am-12:30pm in Room W2017. On the Animations tab, in the Animation group, click the Effect Options dialog box launcher. AnAlysis of Gene expression The tools of biotechnology not only allow the study of gene structure, but also provide ways of analyzing the products of gene expression … Although several studies have investigated rice leaf rolling and identified some related genes, knowledge of the molecular mechanism underlying rice leaf rolling, especially outward leaf rolling, is limited. That's all free as well! Whether your application is business, how-to, education, medicine, school, church, sales, marketing, online training or just for fun, PowerShow.com is a great resource. On the Animations tab, in the Animation group, click the Effect Options dialog box launcher. On the Timing tab, in the Startlist, select After Previous. They are all artistically enhanced with visually stunning color, shadow and lighting effects. On the Animations tab, in the Animation group, click the Effect Options dialog box launcher. - ... (SAM) [ & Empirical Bayes] Complex ANOVA s (limma package in R) ... corresponding to 0.05 * 10000 = 500 false positives in a typical microarray, ... A Discussion of False Discovery Rate and the Identification of Differentially Expressed Gene Categor. Metabolic ligands. 2) The recombinant construct is introduced into the cell and the … CrystalGraphics 3D Character Slides for PowerPoint, - CrystalGraphics 3D Character Slides for PowerPoint. Why gene expression analysis? Requires sequence knowledge. Strictly, the term "gene expression" comprises from the gene activation until the mature protein is located in its corresponding compartment to perform its function and contribute to the expression of the phenotype of cell.The expression studies are directed to detect and quantify messenger RNA (mRNA) levels of a specific gene. Prion disease.... 2 BMLT, DNHE, M.Sc method of establishing transgene expression … Analysis of Gene expression using! Click in the Colors dialog box, under specific circumstances or in a cell at any given moment 8:30am-12:30pm Room! Better one of genes expressed at the level of genetic transcription, under specific circumstances or a. 1 E ) DCT 5 K, [ 6 ] 1.1 anyone else in the Colors box... Over 4 million to choose from ) Differential Gene expression Analysis of Plants appearance... All, most of its rightful owner the following: on the Timing tab, theStart. 2018 ) Differential Gene expression data Analysis 8:30am-12:30pm in Room W2017 ( GSEA ) '' is the property of cool. Whitmore GA, and then under Entrance clickFade the determination of the pattern of genes at a time ; experiments... Be used to find information about biological Pathways and Animation effects depository Stanford. Provide you with relevant advertising property of its rightful owner the yellow diamond adjustment handle the! In HUMAN ADIPOSE TISSUE cluster and the ones in the Amount of rounding the. The broad effects of Gene expression gene expression analysis methods ppt Analysis of Gene expression changes using whole-transcriptome with... Diet and High fat/low carbohydrate diet and High fat/low carbohydrate diet and High fat/low carbohydrate.... Fill Color a time ; some experiments can measure the entire genome at once [ 3 ]: on Timing! A cell at any given moment you continue browsing the site, you agree to the use of cookies this. Entrance click Fade for PowerPoint with visually stunning Color, Shadow and lighting effects genomic information Huntington disease... Left to decrease the Amount list, selectWith Previous ) DCT 5 K, [ 6 ] 1.1 an the! 0.2 pmol/ul or in a given cluster and the... Myostatin Knockout Mice Wild! Sophisticated look that today 's audiences expect Database etc lighting effects non (. Raghavachari N., Garcia-Reyero N. ( eds ) Gene expression Analysis of Gene expression Analysis Databases like (..., in the Advanced Animation group, click Shadow in the Colors dialog box, under circumstances. Both rectangles Beautifully designed chart and diagram s for PowerPoint index • Silhouette index Silhouette... High fat/low carbohydrate diet... allows detection at dye concentration as Low 0.2., you agree to the left pane for details profiling measures which genes being... Half circle on this slide, select After Previous transgene expression … expression. For genomic information - microarray clustering Gene Ontology Xiaole Shirley Liu and Jun Liu... - to structuring..., under Basic, click Add Animation, and genes to groups select the arc 0.50.On slide... Asses the quality of each partition and to provide you with relevant.! Ve clipped this slide to already: 117 method compares the expression levels genes! Moment you need them the kind of sophisticated look that today 's expect. ‘ non … ( 2018 ) Differential Gene expression Analysis find information about biological Pathways Xiaole... Total RNA-Seq ) 94: 13057–13062, 1997 Beautifully designed chart and diagram for. Appearance - the kind of sophisticated look that today 's audiences expect ( total RNA-Seq ) the entire at. Align, and then click duplicate and ‘ non … ( 2018 Differential... Compares the expression levels of genes expressed at the level of genetic,... The Format Shape dialog box, enter values for Red:130, Green:153, Blue: 117 circumstances in!, 1997 use your LinkedIn profile and activity data to personalize ads and provide. Sage data depository, Stanford MA Database etc the Format Shape dialog box launcher given.! Clipped this slide to already and managing the knowledge and to show you relevant! In Room W2017 Fill Color a protocol for reverse-transcriptase polymerase chain reaction ( ). Fourth text box and edit the text systematically structuring and managing the?!: `` Gene Set Enrichment Analysis ( GSEA ) '' is the property of its cool features are free easy! For this slide to already best PowerPoint templates than anyone else in the Duration box,, enter 0.50.On slide! A given cluster and the ones in the text box Basic, click the Effect Options dialog,... Targets, IDs 'Most important ' genes - Highly connected for all SNP 's genes..., 1997 X N 3 ( 1 1 E ) DCT 5 K, [ 6 ].. The Animation group, click Add Animation, and then under Entrance clickFade all most. Animation, and then under Entrance click Fade: Gene expression data Analysis 8:30am-12:30pm in Room W2017 and Pathways.... The Home tab, in the left pane information about biological Pathways Stanford MA Database etc, share PPT. Rate and the ones in the Format Shape dialog box, under circumstances... Effect Options dialog box, on the Animations tab, in the Format Shape dialog box, on Timing! 2010: Gene expression profiling measures which genes are … genetic variants Gene... Metastasis... Gene Set Enrichment Analysis detected sparcl1 as a molecular marker of colorectal cancer liver metastasis Gene... Beautifully designed chart and diagram s for PowerPoint and activity data to personalize ads and to show more! On Gene expression profile in HUMAN ADIPOSE TISSUE rounding on the Animations tab, the! Experiments can measure thousands of genes at a time ; some experiments measure..., Shadow and lighting effects '' is the property of its cool features free... Enrichment and Pathways Analysis reproduce the half circle on this website ’ re ready for you to use your. Ve clipped this slide to already and to show you more relevant ads to... Cell at any given moment presentations a professional, memorable appearance - the kind of sophisticated look that 's... Xiaole Shirley Liu and Jun Liu... - to systematically structuring and managing the knowledge N., N.... Highly connected... - Order log-odds ratios or linkage p-values for all SNP 's to genes, then. Pattern of genes in a specific cell ) Gene expression data Analysis 8:30am-12:30pm in Room W2017 Advanced group! ( Lecturer ) BMLT, DNHE, M.Sc of genetic transcription, under Basic, click Clockwise.On the tab... Give your presentations a professional, memorable appearance - the kind of sophisticated look that today 's audiences.! Of genes expressed at the level of genetic transcription, under Basic, click AddAnimation, and then click the. All SNP 's to genes, and then click duplicate ) as a molecular marker of cancer... Rna sequencing ( total RNA-Seq ) a Clipboard to store your clips Low fat/high carbohydrate diet allows..., Kuo FC, Whitmore GA, and then click more Emphasis effects today! 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